소개
Prof. In-Geol Choi (최인걸)
Tel: 02-3290-3152
E-mail: igchoi@korea.ac.kr
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Laboratory Homepage: http://www.choilab.org
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From the PubMed database, the full name search is available for publications after 2002
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[1] Igor V Grigoriev and In-Geol Choi. “Target selection for structural genomics: a single genome approach”. In: OMICS : A JOURNAL OF INTEGRATIVE BIOLOGY 6.4 (2002), pp. 349-62. DOI: 10.1089/153623102321112773. PMID: 12626094.
[2] In-Geol Choi, Dong Hae Shin, Jeroen Brandsen, Jaru Jancarik, Didier Busso, Hisao Yokota, Rosalind Kim and Sung-Hou Kim. “Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution”. In: JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 4.1 (2003), pp. 31-4. PMID: 12943365.
[3] Sung-Hou Kim, Dong Hae Shin, In-Geol Choi, Ursula Schulze-Gahmen, Shengfeng Chen and Rosalind Kim. “Structure-based functional inference in structural genomics”. In: JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 4.2-3 (2003), pp. 129-35. PMID: 14649297.
[4] In-Geol Choi, Jaimyoung Kwon and Sung-Hou Kim. “Local feature frequency profile: a method to measure structural similarity in proteins”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101.11 (2004), pp. 3797-802. DOI: 10.1073/pnas.0308656100. PMID: 14985506.
[5] Dong Hae Shin, In-Geol Choi, Didier Busso, Jaru Jancarik, Hisao Yokota, Rosalind Kim and Sung-Hou Kim. “Structure of OsmC from Escherichia coli: a salt-shock-induced protein”. In: ACTA CRYSTALLOGRAPHICA. SECTION D, BIOLOGICAL CRYSTALLOGRAPHY 60.Pt 5 (2004), pp. 903-11. DOI: 10.1107/S0907444904005013. PMID: 15103136.
[6] Sung-Hou Kim, Dong Hae Shin, Jinyu Liu, Vaheh Oganesyan, Shengfeng Chen, Qian Steven Xu, Jeong-Sun Kim, Debanu Das, Ursula Schulze-Gahmen, Stephen R Holbrook, et al. “Structural genomics of minimal organisms and protein fold space”. In: JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 6.2-3 (2005), pp. 63-70. DOI: 10.1007/s10969-005-2651-9. PMID: 16211501.
[7] Gregory E Sims, In-Geol Choi and Sung-Hou Kim. “Protein conformational space in higher order phi-Psi maps”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102.3 (2005), pp. 618-21. DOI: 10.1073/pnas.0408746102. PMID: 15640351.
[8] In-Geol Choi and Sung-Hou Kim. “Evolution of protein structural classes and protein sequence families”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 103.38 (2006), pp. 14056-61. DOI: 10.1073/pnas.0606239103. PMID: 16959887.
[9] In-Geol Choi and Sung-Hou Kim. “Global extent of horizontal gene transfer”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 104.11 (2007), pp. 4489-94. DOI: 10.1073/pnas.0611557104. PMID: 17360551.
[10] In-Geol Choi and Yeon Gyu Yu. “Interaction and assembly of HBV structural proteins: novel target sites of anti-HBV agents”. In: INFECTIOUS DISORDERS DRUG TARGETS 7.3 (2007), pp. 251-6. PMID: 17897061.
[11] Dong Hae Shin, Jingtong Hou, John-Marc Chandonia, Debanu Das, In-Geol Choi, Rosalind Kim and Sung-Hou Kim. “Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center”. In: JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 8.2-3 (2007), pp. 99-105. DOI: 10.1007/s10969-007-9025-4. PMID: 17764033.
[12] Ki-Chul Hwang, Ji Young Kim, Woochul Chang, Dae-Sung Kim, Soyeon Lim, Sang-Moon Kang, Byeong-Wook Song, Hye-Yeong Ha, Yong Joon Huh, In-Geol Choi, et al. “Chemicals that modulate stem cell differentiation”. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105.21 (2008), pp. 7467-71. DOI: 10.1073/pnas.0802825105. PMID: 18480249.
[13] Hyun-Soo Kim, Woo-Chul Chang, Ki-Chul Hwang, In-Geol Choi and Wyun-Kon Park. “Effect of propofol on calcium homeostasis in hypoxia-reoxygenated neonatal rat cardiomyocytes”. In: EUROPEAN JOURNAL OF PHARMACOLOGY 594.1-3 (2008), pp. 139-45. DOI: 10.1016/j.ejphar.2008.07.027. PMID: 18674530.
[14] Soo Rin Kim, Hee Jung Park, Do Seong Yim, Hee Tack Kim, In-Geol Choi and Kyoung Heon Kim. “Analysis of survival rates and cellular fatty acid profiles of Listeria monocytogenes treated with supercritical carbon dioxide under the influence of cosolvents”. In: JOURNAL OF MICROBIOLOGICAL METHODS 75.1 (2008), pp. 47-54. DOI: 10.1016/j.mimet.2008.04.012. PMID: 18565606.
[15] Jin Seop Bak, Ja Kyong Ko, In-Geol Choi, Yong-Cheol Park, Jin-Ho Seo and Kyoung Heon Kim. “Fungal pretreatment of lignocellulose by Phanerochaete chrysosporium to produce ethanol from rice straw”. In: BIOTECHNOLOGY AND BIOENGINEERING 104.3 (2009), pp. 471-82. DOI: 10.1002/bit.22423. PMID: 19591194.
[16] Jin Seop Bak, Ja Kyong Ko, Young Hwan Han, Byung Cheol Lee, In-Geol Choi and Kyoung Heon Kim. “Improved enzymatic hydrolysis yield of rice straw using electron beam irradiation pretreatment”. In: BIORESOURCE TECHNOLOGY 100.3 (2009), pp. 1285-90. DOI: 10.1016/j.biortech.2008.09.010. PMID: 18930388.
[17] Eun Sil Kim, Hee Jin Lee, Won-Gi Bang, In-Geol Choi and Kyoung Heon Kim. “Functional characterization of a bacterial expansin from Bacillus subtilis for enhanced enzymatic hydrolysis of cellulose”. In: BIOTECHNOLOGY AND BIOENGINEERING 102.5 (2009), pp. 1342-53. DOI: 10.1002/bit.22193. PMID: 19058186.
[18] Ja Kyong Ko, Jin Seop Bak, Min Woo Jung, Hee Jin Lee, In-Geol Choi, Tae Hyun Kim and Kyoung Heon Kim. “Ethanol production from rice straw using optimized aqueous-ammonia soaking pretreatment and simultaneous saccharification and fermentation processes”. In: BIORESOURCE TECHNOLOGY 100.19 (2009), pp. 4374-80. DOI: 10.1016/j.biortech.2009.04.026. PMID: 19427784.
[19] Ja Kyong Ko, Min Woo Jung, Kyoung Heon Kim and In-Geol Choi. “Optimal production of a novel endo-acting beta-1,4-xylanase cloned from Saccharophagus degradans 2-40 into Escherichia coli BL21(DE3)”. In: NEW BIOTECHNOLOGY 26.3-4 (2009), pp. 157-64. DOI: 10.1016/j.nbt.2009.07.009. PMID: 19646553.
[20] Saeyoung Lee, Jonas Yun Lee, Sung Chul Ha, Jina Jung, Dong Hae Shin, Kyoung Heon Kim and In Geol Choi. “Crystallization and preliminary X-ray analysis of neoagarobiose hydrolase from Saccharophagus degradans 2-40”. In: ACTA CRYSTALLOGRAPHICA. SECTION F, STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 65.Pt 12 (2009), pp. 1299-301. DOI: 10.1107/S174430910904603X. PMID: 20054134.
[21] Jin Seop Bak, Myoung Dong Kim, In-Geol Choi and Kyoung Heon Kim. “Biological pretreatment of rice straw by fermenting with Dichomitus squalens”. In: NEW BIOTECHNOLOGY 27.4 (2010), pp. 424-34. DOI: 10.1016/j.nbt.2010.02.021. PMID: 20206309.
[22] Hee Taek Kim, Saeyoung Lee, Dongho Lee, Hyun-Soo Kim, Won-Gi Bang, Kyoung Heon Kim and In-Geol Choi. “Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40: an exo-type beta-agarase producing neoagarobiose”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 86.1 (2010), pp. 227-34. DOI: 10.1007/s00253-009-2256-5. PMID: 19802606.
[23] Hyeok-Jin Ko, Eun Woo Lee, Won-Gi Bang, Cheol-Koo Lee, Kyoung Heon Kim and In-Geol Choi. “Molecular characterization of a novel bacterial aryl acylamidase belonging to the amidase signature enzyme family”. In: MOLECULES AND CELLS 29.5 (2010), pp. 485-92. DOI: 10.1007/s10059-010-0060-9. PMID: 20396964.
[24] Hee Jin Lee, Saeyoung Lee, Hyeok-Jin Ko, Kyoung Heon Kim and In-Geol Choi. “An expansin-like protein from Hahella chejuensis binds cellulose and enhances cellulase activity”. In: MOLECULES AND CELLS 29.4 (2010), pp. 379-85. DOI: 10.1007/s10059-010-0033-z. PMID: 20213317.
[25] Min Hye Shin, Do Yup Lee, Kirsten Skogerson, Gert Wohlgemuth, In-Geol Choi, Oliver Fiehn and Kyoung Heon Kim. “Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans”. In: BIOTECHNOLOGY AND BIOENGINEERING 105.3 (2010), pp. 477-88. DOI: 10.1002/bit.22557. PMID: 19806675.
[26] Min Hye Shin, Do Yup Lee, Gert Wohlgemuth, In-Geol Choi, Oliver Fiehn and Kyoung Heon Kim. “Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40”. In: NEW BIOTECHNOLOGY 27.2 (2010), pp. 156-68. DOI: 10.1016/j.nbt.2010.02.023. PMID: 20215059.
[27] Heesang Song, Byeong-Wook Song, Min-Ji Cha, In-Geol Choi and Ki-Chul Hwang. “Modification of mesenchymal stem cells for cardiac regeneration”. In: EXPERT OPINION ON BIOLOGICAL THERAPY 10.3 (2010), pp. 309-19. DOI: 10.1517/14712590903455997. PMID: 20132054.
[28] Sung Chul Ha, Saeyoung Lee, Jonas Lee, Hee Taek Kim, Hyeok-Jin Ko, Kyoung Heon Kim and In-Geol Choi. “Crystal structure of a key enzyme in the agarolytic pathway, α-neoagarobiose hydrolase from Saccharophagus degradans 2-40”. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 412.2 (2011), pp. 238-44. DOI: 10.1016/j.bbrc.2011.07.073. PMID: 21810409.
[29] Young Hoon Jung, In Jung Kim, Jong-In Han, In-Geol Choi and Kyoung Heon Kim. “Aqueous ammonia pretreatment of oil palm empty fruit bunches for ethanol production”. In: BIORESOURCE TECHNOLOGY 102.20 (2011), pp. 9806-9. DOI: 10.1016/j.biortech.2011.07.050. PMID: 21852123.
[30] Young Hoon Jung, In Jung Kim, Jae Jin Kim, Kyeong Keun Oh, Jong-In Han, In-Geol Choi and Kyoung Heon Kim. “Ethanol production from oil palm trunks treated with aqueous ammonia and cellulase”. In: BIORESOURCE TECHNOLOGY 102.15 (2011), pp. 7307-12. DOI: 10.1016/j.biortech.2011.04.082. PMID: 21616661.
[31] Sejong Oh, Hanseong Roh, Hyeok-Jin Ko, Sujin Kim, Kyoung Heon Kim, Sung Eun Lee, In Seop Chang, Saehun Kim and In-Geol Choi. “Complete genome sequencing of Lactobacillus acidophilus 30SC, isolated from swine intestine”. In: JOURNAL OF BACTERIOLOGY 193.11 (2011), pp. 2882-3. DOI: 10.1128/JB.00343-11. PMID: 21478365.
[32] Hanseong Roh, Hyeok-Jin Ko, Daehee Kim, Dong Geon Choi, Shinyoung Park, Sujin Kim, In Seop Chang and In-Geol Choi. “Complete genome sequence of a carbon monoxide-utilizing acetogen, Eubacterium limosum KIST612”. In: JOURNAL OF BACTERIOLOGY 193.1 (2011), pp. 307-8. DOI: 10.1128/JB.01217-10. PMID: 21036996.
[33] Hanseong Roh, Gabriel C Uguru, Hyeok-Jin Ko, Sujin Kim, Byung-Yong Kim, Michael Goodfellow, Alan T Bull, Kyoung Heon Kim, Mervyn J Bibb, In-Geol Choi, et al. “Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032”. In: JOURNAL OF BACTERIOLOGY 193.13 (2011), pp. 3391-2. DOI: 10.1128/JB.05041-11. PMID: 21551311.
[34] Kwang-Il Goh and In-Geol Choi. “Exploring the human diseasome: the human disease network”. In: BRIEFINGS IN FUNCTIONAL GENOMICS11.6 (2012), pp. 533-42. DOI: 10.1093/bfgp/els032. PMID: 23063808.
[35] Young Hoon Jung, Sooah Kim, Taek Ho Yang, Hee Jong Lee, Doyoung Seung, Yong-Cheol Park, Jin-Ho Seo, In-Geol Choi and Kyoung Heon Kim. “Aqueous ammonia pretreatment, saccharification, and fermentation evaluation of oil palm fronds for ethanol production”. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING 35.9 (2012), pp. 1497-503. DOI: 10.1007/s00449-012-0739-8. PMID: 22644062.
[36] Hee Taek Kim, Jae Hyuk Chung, Damao Wang, Jieun Lee, Hee Chul Woo, In-Geol Choi and Kyoung Heon Kim. “Depolymerization of alginate into a monomeric sugar acid using Alg17C, an exo-oligoalginate lyase cloned from Saccharophagus degradans 2-40”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 93.5 (2012), pp. 2233-9. DOI: 10.1007/s00253-012-3882-x. PMID: 22281843.
[37] Hee Taek Kim, Hyeok-Jin Ko, Nahyun Kim, Duwoon Kim, Dongho Lee, In-Geol Choi, Hee Chul Woo, Myoung Dong Kim and Kyoung Heon Kim. “Characterization of a recombinant endo-type alginate lyase (Alg7D) from Saccharophagus degradans”. In: BIOTECHNOLOGY LETTERS34.6 (2012), pp. 1087-92. DOI: 10.1007/s10529-012-0876-9. PMID: 22391735.
[38] Hee Taek Kim, Saeyoung Lee, Kyoung Heon Kim and In-Geol Choi. “The complete enzymatic saccharification of agarose and its application to simultaneous saccharification and fermentation of agarose for ethanol production”. In: BIORESOURCE TECHNOLOGY 107 (2012), pp. 301-6. DOI: 10.1016/j.biortech.2011.11.120. PMID: 22209444.
[39] Su Jin Kim, Seung Chul Shin, Soon Gyu Hong, Yung Mi Lee, In-Geol Choi and Hyun Park. “Genome sequence of a novel member of the genus Psychrobacter isolated from Antarctic soil”. In: JOURNAL OF BACTERIOLOGY 194.9 (2012), p. 2403. DOI: 10.1128/JB.00234-12. PMID: 22493207.
[40] Su Jin Kim, Seung Chul Shin, Soon Gyu Hong, Yung Mi Lee, Hyoungseok Lee, Jungeun Lee, In-Geol Choi and Hyun Park. “Genome sequence of Janthinobacterium sp. strain PAMC 25724, isolated from alpine glacier cryoconite”. In: JOURNAL OF BACTERIOLOGY 194.8 (2012), p. 2096. DOI: 10.1128/JB.00096-12. PMID: 22461541.
[41] Hyeok-Jin Ko, Won-Gi Bang, Kyoung Heon Kim and In-Geol Choi. “Production of p-acetaminophenol by whole-cell catalysis using Escherichia coli overexpressing bacterial aryl acylamidase”. In: BIOTECHNOLOGY LETTERS 34.4 (2012), pp. 677-82. DOI: 10.1007/s10529-011-0811-5. PMID: 22130742.
[42] Hyeok-Jin Ko, Eunhye Park, Joseph Song, Taek Ho Yang, Hee Jong Lee, Kyoung Heon Kim and In-Geol Choi. “Functional cell surface display and controlled secretion of diverse Agarolytic enzymes by Escherichia coli with a novel ligation-independent cloning vector based on the autotransporter YfaL”. In: APPLIED AND ENVIRONMENTAL MICROBIOLOGY 78.9 (2012), pp. 3051-8. DOI: 10.1128/AEM.07004-11. PMID: 22344647.
[43] Hanseong Roh, Eun Ju Yun, Saeyoung Lee, Hyeok-Jin Ko, Sujin Kim, Byung-Yong Kim, Heesang Song, Kwang-il Lim, Kyoung Heon Kim and In-Geol Choi. “Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source”. In: JOURNAL OF BACTERIOLOGY 194.10 (2012), pp. 2773-4. DOI: 10.1128/JB.00303-12. PMID: 22535948.
[44] Hee Taek Kim, Eun Ju Yun, Damao Wang, Jae Hyuk Chung, In-Geol Choi and Kyoung Heon Kim. “High temperature and low acid pretreatment and agarase treatment of agarose for the production of sugar and ethanol from red seaweed biomass”. In: BIORESOURCE TECHNOLOGY 136 (2013), pp. 582-7. DOI: 10.1016/j.biortech.2013.03.038. PMID: 23567734.
[45] In Jung Kim, Hyeok-Jin Ko, Tae-Wan Kim, In-Geol Choi and Kyoung Heon Kim. “Characteristics of the binding of a bacterial expansin (BsEXLX1) to microcrystalline cellulose”. In: BIOTECHNOLOGY AND BIOENGINEERING 110.2 (2013), pp. 401-7. DOI: 10.1002/bit.24719. PMID: 22949138.
[46] In Jung Kim, Hyeok-Jin Ko, Tae-Wan Kim, Ki Hyun Nam, In-Geol Choi and Kyoung Heon Kim. “Binding characteristics of a bacterial expansin (BsEXLX1) for various types of pretreated lignocellulose”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 97.12 (2013), pp. 5381-8. DOI: 10.1007/s00253-012-4412-6. PMID: 23053073.
[47] Hee Jin Lee, In Jung Kim, Jihyun F Kim, In-Geol Choi and Kyoung Heon Kim. “An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis”. In: BIORESOURCE TECHNOLOGY 149 (2013), pp. 516-9. DOI: 10.1016/j.biortech.2013.09.086. PMID: 24140897.
[48] Eun Ju Yun, Saeyoung Lee, Ji Hye Kim, Bo Bae Kim, Hee Taek Kim, Sun Hee Lee, Jeffrey G Pelton, Nam Joo Kang, In-Geol Choi and Kyoung Heon Kim. “Enzymatic production of 3,6-anhydro-L-galactose from agarose and its purification and in vitro skin whitening and anti-inflammatory activities”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 97.7 (2013), pp. 2961-70. DOI: 10.1007/s00253-012-4184-z. PMID: 22678025.
[49] Donggeon Choi, Sae Bom Lee, Sohyun Kim, Byoungnam Min, In-Geol Choi and In Seop Chang. “Metabolically engineered glucose-utilizing Shewanella strains under anaerobic conditions”. In: BIORESOURCE TECHNOLOGY 154 (2014), pp. 59-66. DOI: 10.1016/j.biortech.2013.12.025. PMID: 24384311.
[50] Hyerim Hong, Hyeok-Jin Ko, In-Geol Choi and Woojun Park. “Previously undescribed plasmids recovered from activated sludge confer tetracycline resistance and phenotypic changes to Acinetobacter oleivorans DR1”. In: MICROBIAL ECOLOGY 67.2 (2014), pp. 369-79. DOI: 10.1007/s00248-013-0343-8. PMID: 24337108.
[51] Young Hoon Jung, Hyun Kyung Kim, Du-Sup Song, In-Geol Choi, Taek Ho Yang, Hee Jong Lee, Doyoung Seung and Kyoung Heon Kim. “Feasibility test of utilizing Saccharophagus degradans 2-40(T) as the source of crude enzyme for the saccharification of lignocellulose”. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING 37.4 (2014), pp. 707-10. DOI: 10.1007/s00449-013-1040-1. PMID: 23990129.
[52] In Jung Kim, Hee Jin Lee, In-Geol Choi and Kyoung Heon Kim. “Synergistic proteins for the enhanced enzymatic hydrolysis of cellulose by cellulase”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 98.20 (2014), pp. 8469-80. DOI: 10.1007/s00253-014-6001-3. PMID: 25129610.
[53] Chan Hyoung Lee, Hee Taek Kim, Eun Ju Yun, Ah Reum Lee, Sa Rang Kim, Jae-Han Kim, In-Geol Choi and Kyoung Heon Kim. “A novel agarolytic β-galactosidase acts on agarooligosaccharides for complete hydrolysis of agarose into monomers”. In: APPLIED AND ENVIRONMENTAL MICROBIOLOGY 80.19 (2014), pp. 5965-73. DOI: 10.1128/AEM.01577-14. PMID: 25038102.
[54] Robin A Ohm, Robert Riley, Asaf Salamov, Byoungnam Min, In-Geol Choi and Igor V Grigoriev. “Genomics of wood-degrading fungi”. In: FUNGAL GENETICS AND BIOLOGY : FG & B 72 (2014), pp. 82-90. DOI: 10.1016/j.fgb.2014.05.001. PMID: 24853079.
[55] Jieun An, Hyeji Kwon, Eunjung Kim, Young Mi Lee, Hyeok Jin Ko, Hongjae Park, In-Geol Choi, Sooah Kim, Kyoung Heon Kim, Wankee Kim, et al. “Tolerance to acetic acid is improved by mutations of the TATA-binding protein gene”. In: ENVIRONMENTAL MICROBIOLOGY 17.3 (2015), pp. 656-69. DOI: 10.1111/1462-2920.12489. PMID: 24761971.
[56] Jiyeong Jeong, Johannes Bertsch, Verena Hess, Sunju Choi, In-Geol Choi, In Seop Chang and Volker Müller. “Energy Conservation Model Based on Genomic and Experimental Analyses of a Carbon Monoxide-Utilizing, Butyrate-Forming Acetogen, Eubacterium limosum KIST612”. In: APPLIED AND ENVIRONMENTAL MICROBIOLOGY 81.14 (2015), pp. 4782-90. DOI: 10.1128/AEM.00675-15. PMID: 25956767.
[57] In Jung Kim, Ki Hyun Nam, Eun Ju Yun, Sooah Kim, Hak Jin Youn, Hee Jin Lee, In-Geol Choi and Kyoung Heon Kim. “Optimization of synergism of a recombinant auxiliary activity 9 from Chaetomium globosum with cellulase in cellulose hydrolysis”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 99.20 (2015), pp. 8537-47. DOI: 10.1007/s00253-015-6592-3. PMID: 25936375.
[58] Sun-Ki Kim, Yong-Su Jin, In-Geol Choi, Yong-Cheol Park and Jin-Ho Seo. “Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents”. In: METABOLIC ENGINEERING 29 (2015), pp. 46-55. DOI: 10.1016/j.ymben.2015.02.004. PMID: 25724339.
[59] Saeyoung Lee, Eun-Hye Park, Hyeok-Jin Ko, Won Gi Bang, Hye-Yeon Kim, Kyoung Heon Kim and In-Geol Choi. “Crystal structure analysis of a bacterial aryl acylamidase belonging to the amidase signature enzyme family”. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 467.2 (2015), pp. 268-74. DOI: 10.1016/j.bbrc.2015.09.177. PMID: 26454172.
[60] Yeji Lee, Olviyani Nasution, Eunyong Choi, In-Geol Choi, Wankee Kim and Wonja Choi. “Transcriptome analysis of acetic-acid-treated yeast cells identifies a large set of genes whose overexpression or deletion enhances acetic acid tolerance”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 99.15 (2015), pp. 6391-403. DOI: 10.1007/s00253-015-6706-y. PMID: 26062532.
[61] Byoungnam Min, Hongjae Park, Yeongseon Jang, Jae-Jin Kim, Kyoung Heon Kim, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Igor V Grigoriev, Joseph W Spatafora, et al. “Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation”. In: JOURNAL OF BIOTECHNOLOGY 211 (2015), pp. 42-3. DOI: 10.1016/j.jbiotec.2015.06.426. PMID: 26188242.
[62] Olviyani Nasution, Jaok Lee, Kavitha Srinivasa, In-Geol Choi, Young Mi Lee, Eunjung Kim, Wonja Choi and Wankee Kim. “Loss of Dfg5 glycosylphosphatidylinositol-anchored membrane protein confers enhanced heat tolerance in Saccharomyces cerevisiae”. In: ENVIRONMENTAL MICROBIOLOGY 17.8 (2015), pp. 2721-34. DOI: 10.1111/1462-2920.12649. PMID: 25297926.
[63] Eun Ju Yun, In-Geol Choi and Kyoung Heon Kim. “Red macroalgae as a sustainable resource for bio-based products”. In: TRENDS IN BIOTECHNOLOGY 33.5 (2015), pp. 247-9. DOI: 10.1016/j.tibtech.2015.02.006. PMID: 25818231.
[64] Eun Ju Yun, Saeyoung Lee, Hee Taek Kim, Jeffrey G Pelton, Sooah Kim, Hyeok-Jin Ko, In-Geol Choi and Kyoung Heon Kim. “The novel catabolic pathway of 3,6-anhydro-L-galactose, the main component of red macroalgae, in a marine bacterium”. In: ENVIRONMENTAL MICROBIOLOGY 17.5 (2015), pp. 1677-88. DOI: 10.1111/1462-2920.12607. PMID: 25156229.
[65] Sun Young Choi, Byeonghyeok Park, In-Geol Choi, Sang Jun Sim, Sun-Mi Lee, Youngsoon Um and Han Min Woo. “Transcriptome landscape of Synechococcus elongatus PCC 7942 for nitrogen starvation responses using RNA-seq”. In: SCIENTIFIC REPORTS 6 (2016), p. 30584. DOI: 10.1038/srep30584. PMID: 27488818.
[66] Jin-Ju Jeong, Dong Wan Lee, Byeonghyeok Park, Mee Kyung Sang, In-Geol Choi and Ki Deok Kim. “Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root and emended description of Chryseobacterium arthrosphaerae”. In: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016). DOI: 10.1099/ijsem.0.001670. PMID: 27902284.
[67] Jin-Ju Jeong, Byeong Hyeok Park, Hongjae Park, In-Geol Choi and Ki Deok Kim. “Draft Genome Sequence of Chryseobacterium sp. Strain GSE06, a Biocontrol Endophytic Bacterium Isolated from Cucumber (Cucumis sativus)”. In: GENOME ANNOUNCEMENTS 4.3 (2016). DOI: 10.1128/genomeA.00577-16. PMID: 27313310.
[68] Jin-Ju Jeong, Byeonghyeok Park, Ji Yeon Oh, Mohamed Mannaa, Yoo Jun Kim, Jeum Kyu Hong, In-Geol Choi and Ki Deok Kim. “Draft Genome Sequences of Chryseobacterium artocarpi UTM-3T and Chryseobacterium contaminans C26T, Isolated from Rhizospheres, and Chryseobacterium arthrosphaerae CC-VM-7T, Isolated from the Feces of a Pill Millipede”. In: GENOME ANNOUNCEMENTS 4.5 (2016). DOI: 10.1128/genomeA.01168-16. PMID: 27795281.
[69] Jin-Ju Jeong, Hongjae Park, Byeong Hyeok Park, Mohamed Mannaa, Mee Kyung Sang, In-Geol Choi and Ki Deok Kim. “Draft Genome Sequence of a Biocontrol Rhizobacterium, Chryseobacterium kwangjuense Strain KJ1R5, Isolated from Pepper (Capsicum annuum)”. In: GENOME ANNOUNCEMENTS 4.2 (2016). DOI: 10.1128/genomeA.00301-16. PMID: 27103726.
[70] Hyun Jung Kim, Hyo Jung Eom, Chulwoo Park, Jaejoon Jung, Bora Shin, Wook Kim, Namhyun Chung, In-Geol Choi and Woojun Park. “Calcium Carbonate Precipitation by Bacillus and Sporosarcina Strains Isolated from Concrete and Analysis of the Bacterial Community of Concrete”. In: JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY 26.3 (2016), pp. 540-8. DOI: 10.4014/jmb.1511.11008. PMID: 26699752.
[71] Ja Kyong Ko, Hyeokjin Ko, Kyoung Heon Kim and In-Geol Choi. “Characterization of the biochemical properties of recombinant Xyn10C from a marine bacterium, Saccharophagus degradans 2-40”. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING 39.4 (2016), pp. 677-84. DOI: 10.1007/s00449-016-1548-2. PMID: 26809714.
[72] Hongjae Park, Byeonghyeok Park, Hyun Jung Kim, Woojun Park and In-Geol Choi. “Draft Genome Sequences of Two Ureolytic Bacteria Isolated from Concrete Block Waste”. In: GENOME ANNOUNCEMENTS 4.4 (2016). DOI: 10.1128/genomeA.00762-16. PMID: 27491992.
[73] Eun Ju Yun, Hee Taek Kim, Kyung Mun Cho, Sora Yu, Sooah Kim, In-Geol Choi and Kyoung Heon Kim. “Pretreatment and saccharification of red macroalgae to produce fermentable sugars”. In: BIORESOURCE TECHNOLOGY 199 (2016), pp. 311-318. DOI: 10.1016/j.biortech.2015.08.001. PMID: 26276401.
[74] Jung Hyun Kim, Eun Ju Yun, Nari Seo, Sora Yu, Dong Hyun Kim, Kyung Mun Cho, Hyun Joo An, Jae-Han Kim, In-Geol Choi and Kyoung Heon Kim. “Enzymatic liquefaction of agarose above the sol-gel transition temperature using a thermostable endo-type β-agarase, Aga16B”. In: APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 101.3 (2017), pp. 1111-1120. DOI: 10.1007/s00253-016-7831-y. PMID: 27664160.
[75] Hyeok-Jin Ko, Hyun Joo Park, Sun Hee Lee, Haeyoung Jeong, Jung-Hoon Bae, Bong Hyun Sung, In-Geol Choi and Jung-Hoon Sohn. “Draft Genome Sequence of an Acid-Tolerant Yeast, Candida zemplinina NP2, a Potential Producer of Organic Acids”. In: GENOME ANNOUNCEMENTS5.39 (2017). DOI: 10.1128/genomeA.01052-17. PMID: 28963218.
[76] Hee Jin Lee, In Jung Kim, Hak Jin Youn, Eun Ju Yun, In-Geol Choi and Kyoung Heon Kim. “Cellotriose-hydrolyzing activity conferred by truncating the carbohydrate-binding modules of Cel5 from Hahella chejuensis”. In: BIOPROCESS AND BIOSYSTEMS ENGINEERING 40.2 (2017), pp. 241-249. DOI: 10.1007/s00449-016-1692-8. PMID: 27761654.
[77] Saeyoung Lee, Kyoung Heon Kim, Hye-Yeon Kim and In-Geol Choi. “Crystal structure analysis of 3,6-anhydro-l-galactonate cycloisomerase suggests emergence of novel substrate specificity in the enolase superfamily”. In: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 491.1 (2017), pp. 217-222. DOI: 10.1016/j.bbrc.2017.07.080. PMID: 28716734.
[78] Saeyoung Lee, Eun Ju Yun, Kyoung Heon Kim, Hye Yeon Kim and In Geol Choi. “3,6-Anhydro-L-galactonate cycloisomerase from Vibrio sp. strain EJY3: crystallization and X-ray crystallographic analysis”. In: ACTA CRYSTALLOGRAPHICA. SECTION F, STRUCTURAL BIOLOGY COMMUNICATIONS 73.Pt 9 (2017), pp. 511-514. DOI: 10.1107/S2053230X17011797. PMID: 28876229.
[79] Byoungnam Min, Igor V Grigoriev and In-Geol Choi. “FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation”. In: BIOINFORMATICS (OXFORD, ENGLAND) 33.18 (2017), pp. 2936-2937. DOI: 10.1093/bioinformatics/btx353. PMID: 28582481.
[80] Byoungnam Min, Ji-Hyun Park, Hongjae Park, Hyeon-Dong Shin and In-Geol Choi. “Genome Analysis of a Zygomycete Fungus Choanephora cucurbitarum Elucidates Necrotrophic Features Including Bacterial Genes Related to Plant Colonization”. In: SCIENTIFIC REPORTS 7 (2017), p. 40432. DOI: 10.1038/srep40432. PMID: 28091548.
[81] Byeonghyeok Park, Min-Jeong Baek, Byoungnam Min and In-Geol Choi. “Prokaryotic Contig Annotation Pipeline Server: Web Application for a Prokaryotic Genome Annotation Pipeline Based on the Shiny App Package”. In: JOURNAL OF COMPUTATIONAL BIOLOGY : A JOURNAL OF COMPUTATIONAL MOLECULAR CELL BIOLOGY 24.9 (2017), pp. 917-922. DOI: 10.1089/cmb.2017.0066. PMID: 28632399.
[82] Shinyoung Park, Muhammad Yasin, Jiyeong Jeong, Minseok Cha, Hyunsoo Kang, Nulee Jang, In-Geol Choi and In Seop Chang. “Acetate-assisted increase of butyrate production by Eubacterium limosum KIST612 during carbon monoxide fermentation”. In: BIORESOURCE TECHNOLOGY 245.Pt A (2017), pp. 560-566. DOI: 10.1016/j.biortech.2017.08.132. PMID: 28898856.
[83] Duleepa Pathiraja, Kyoung Heon Kim and In-Geol Choi. “Rapid and robust enzymatic sensing and quantitation of 3,6-Anhydro-L-galactose in a heterogeneous sugar mixture”. In: CARBOHYDRATE RESEARCH 446-447 (2017), pp. 13-18. DOI: 10.1016/j.carres.2017.04.022. PMID: 28482192.
Research
Research Topic
We Seek Answers for ‘Big Questions’ by Reading Genome, Writing Genome and Editing Genome. From Molecules To Organisms, We See Everything in the Light of Evolution.
For more details, http://compbio.korea.ac.kr/csbl/topics.htmlLab Members